Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDTGRRILLNCDMGESFGAWRMGDDVHSMPLVDQANLACGFHAGDPLTMRRAVELAVRHGVSIGAHPAYPDLSGFGRRSLACSAEEVHAMVLYQIGALDAFCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLALADNGRELELADEADVPLLFEAFADRAYLPDGRLAPRRLGGAVHHDPQRIIEQALAIARGEAFPDYDGNPLRLTADSLCVHGDNPQSLAVLRRLRAALDSL
1V6T Chain:A ((2-242))
------RVDLNSDLGESFGRYKLGLDEEVMKYITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLS---NSRVADIAEEMGLKVAHEVFADRAYNPDGTLVP-----AVIEDKEEIAERVISMVKDGGIRAINGEWVDLKVDTICVHGDNPKAVEITSYIRKVLEE-
General information:
TITO was launched using:
RESULT:
Template:
1V6T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171512 for 2059 contacts (-83.3/contact) +
2D Compatibility (PS) -26418 + (NN) -14604 + (LL) 484
1D Compatibility (HY) -20000 + (ID) 5200
Total energy: -237250.0 ( -115.23 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1V6T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V6T-query.scw
PDB file :
Tito_Scwrl_1V6T.pdb
: