Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLLKSLAAVSSITMLSRVLGFVRDTILARIFGAGLATDAFFVAFKLPNLLRRIFAEGAFSQAFVPILAEYKNQQGEEATRTFIAYVSGLLTLVLALVTALGILAAPWVIWVTAPGFADTPEKFALTTDLLRVTFPYILLISLSSLAGAILNTWNRFSVPAFVPTLLNVAMIGFALFLTPYFDPPVMVLGWAVLAGGLLQLLYQLPHLRKIGMLVLPRLNLRDSGVWRVMKLMLPAILGVSVSQISLIINTIFASFLAAGSVSWMYYADRLMELPSGVLGVALGTILLPMLAKTYSNKDRHEYSRLLDWGLRLCFLLVLPCSLALAILAEPLTVSLFQYGKFTTVDAAMTQRALVAYSVGLLGIILVKVLAPGFYAQQNIRTPVKIALFTLVSTQLMNLAFIGPLQHAGLALSIGLAACLNAGLLYWQLRKQRLYLPQPGWAKFLVKLVVAVLAMSAVLLATMHWLPAWEQGAMLERFLRLGLLVVAGLLAYFGMLALLGFRLRDFSRRAVL |
| 3C5Y Chain:A ((40-84)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALTTVAEPLGHKVFNYGMYTAEDKA----SLTYVMNGLLAGILLNSGAADF------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -15074 for 201 contacts (-75.0/contact) +
2D Compatibility (PS) -4572 + (NN) -1019 + (LL) 41988
1D Compatibility (HY) -2400 + (ID) 950
Total energy: 17973.0 ( 89.42 by residue)
QMean score : 0.167
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