Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTASEEKFTRQTLLDVQPLTPNLFTLRTSRDAGFRFRAGQFARLGVYKPSGSIVWRAYSMVSAPHDEFLDFFSIVVPDGEFTSELSRLREGDQLLVDRQAFGFLTLDRFVDGRDLWLLATGTGVAPFVSILQDFEVWERFESIKLVYSVRESKELAYRELIAG-LAEREYLAEHA-HKLQFIPVVTREQVPGCLNGRITTLIENGDL-ERAADLELTPEHSRVMLCGNPQMIEDTRAVLKARGMNLSL-TRRPGQVAVENYW
2QDX Chain:A ((6-251))
----------ERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGL-EVDGRPLMRAYSIASPNYEEHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTRE--PFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEETSAVLDSFGLKISPRMGEPGDYLIE---
General information:
TITO was launched using:
RESULT:
Template:
2QDX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179273 for 1988 contacts (-90.2/contact) +
2D Compatibility (PS) -25394 + (NN) -1985 + (LL) 1504
1D Compatibility (HY) -22400 + (ID) 5250
Total energy: -232798.0 ( -117.10 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_2QDX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QDX-query.scw
PDB file :
Tito_Scwrl_2QDX.pdb
: