Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQEVRFSRLEPEQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYLAVTGRVMRLLRGAIDTAPGGARPRLSAFFEASFSAELLDPQLLDAWLA--FWGAVGSIEAIGRVHDHSYGEYRALLVGVLRQLAEEGGWADFDAELAAISLSALLDGLWLESGLNPATFTPRQGVQICEAWVDGLEAGAHRRFRRAMEAC
2NX4 Chain:A ((5-193))
---------VDHDERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEATDRRIAEALGDATGLDALRILCREVMPINEE----QLLEARIAASLWPRAMYDEQMAATNRRTMDNWREQMAIFLEQAREEGSVGDIDVTIVVEQLLNMMMGMQILGVLTPGETSSERQLEMLEQFVAAL---------------
General information:
TITO was launched using:
RESULT:
Template:
2NX4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115663 for 1376 contacts (-84.1/contact) +
2D Compatibility (PS) -20712 + (NN) -14214 + (LL) 2436
1D Compatibility (HY) -9600 + (ID) 2150
Total energy: -159903.0 ( -116.21 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_2NX4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NX4-query.scw
PDB file :
Tito_Scwrl_2NX4.pdb
: