Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRDTLHDLHRPLGDTGLAVSPLGLGTVKFGRDQGVKYPSGFTIPDDREAADLLALARDLGINLIDTAPAYGRSEERLGPLLRGQREHWVIVSKVGEEFVDGQSVFDFSAAHTRRSVERSLKRLETDRIELVLVHSDGNDLDILENSEVYPTLAALKREGLIGAYGLSGKTVEGGLRALREGDCAMVTYNLNERAERPVIEYAAAHAKGILVKKALASGHACLGAGQDPVRASFELVFDQPGVAAAIVGTINPLHLAHNVAMAAQALKKA
4EXB Chain:A ((1-268))
MIRDTLHDLHRPLGDTGLAVSPLGLGTVKFGRD---------TIPDDREAADLLALARDLGINLIDTAPAYGRSEERLGPLLRGQREHWVIVSKVGEE--DGQSVFDFSAAHTRRSVERSLKRLETDRIELVLVHSDGNDLDILENSEVYPTLAALKREGLIGAYGLSGKTVEGGLRALREGDCAMVTYNLNERAERPVIEYAAAHAKGILVKKALAS-------GQDPVRASFELVFDQPGVAAAIVGTINPLHLAHNVAMAAQALK--
General information:
TITO was launched using:
RESULT:
Template:
4EXB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158742 for 2202 contacts (-72.1/contact) +
2D Compatibility (PS) -27194 + (NN) -13076 + (LL) 840
1D Compatibility (HY) -31600 + (ID) 12500
Total energy: -242272.0 ( -110.02 by residue)
QMean score : 0.659
(partial model without unconserved sides chains):
PDB file :
Tito_4EXB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EXB-query.scw
PDB file :
Tito_Scwrl_4EXB.pdb
: