Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQATCARIARRFVWRNRMPRRLFIGLFLLPLPLFAAPPKDELAYAVGARLGMRLQQEMPGLELSELLLGLRQAYRGEALEIPPERIEQLLLQHENA-----TTETPRTTPAEA----RFLANEKARFGVRELTGGVLVSELRRGQGNGIGAATQVHVRYRGLLADGQVFDQSESA---EWFALDSVIEGWRTALRAMPVGARWRVVIPSAQAYGHEGAGDLIPPDAPLVFEIDLLGFR
1FD9 Chain:A ((9-210))
-------------------------------------TDKDKLSYSIGADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK
General information:
TITO was launched using:
RESULT:
Template:
1FD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76446 for 1244 contacts (-61.5/contact) +
2D Compatibility (PS) -20735 + (NN) -10120 + (LL) 3908
1D Compatibility (HY) -13600 + (ID) 2950
Total energy: -119943.0 ( -96.42 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1FD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FD9-query.scw
PDB file :
Tito_Scwrl_1FD9.pdb
: