Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSALVGVIMGSKSDWSTLSHTADMLDKLGIPYEVKVVSAHRTPDLLFQYAEEAEGRGLEVIIAGAGGAAHLPGMCAAKTHLPVLGVPVQSSMLSGVDSLLSIVQMPAGVPVATLAIGKAGAVNAALLSASILGAKHPQYHEALKQFRANQTETVLDNPDPRDA
3OPQ Chain:A ((2-161))
-SVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRAEQTRFVLENPDPR--
General information:
TITO was launched using:
RESULT:
Template:
3OPQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130013 for 1326 contacts (-98.0/contact) +
2D Compatibility (PS) -17422 + (NN) -7469 + (LL) 276
1D Compatibility (HY) -17200 + (ID) 5700
Total energy: -177528.0 ( -133.88 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_3OPQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OPQ-query.scw
PDB file :
Tito_Scwrl_3OPQ.pdb
: