Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLLVSLLLTLGLTGLAHAAGDAAAGQAKAAVCGACHGADGNSPAPNFPKLAGQGERYLLKQMHDIKDGK---------RTVLEMTGLLTNLSDQDLADIAAYFASQKMSVGMADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYIQGLH
1M6Z Chain:A ((1-190))
--------------------AGDAEAGQGKVAVCGACHGVDGNSPAPNFPKLAGQGERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGMLDPLSDQDLEDIAAYFSSQKGSVGYADPALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHAAYTAKQLTDFREGNRTNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH
General information:
TITO was launched using:
RESULT:
Template:
1M6Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28544 for 1459 contacts (-19.6/contact) +
2D Compatibility (PS) -19930 + (NN) -11975 + (LL) 1856
1D Compatibility (HY) -16000 + (ID) 7150
Total energy: -81743.0 ( -56.03 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_1M6Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M6Z-query.scw
PDB file :
Tito_Scwrl_1M6Z.pdb
: