Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSIMMLPMEQKIQWVPTSLQDITAVLGTEAYTEEDKSMVSHAQKSQHSCLSHSRWLRSPQVTGGSWDLRIRPSKDSSSFRQAQCLRKDPGANNHLESQGVRGTAGDADRELRGPSEKATAGQPRVTLLPTPHVSGLSQEFESHWPEIAERSPCVAGVIPVIYYSVLLGLGLPVSLLTAVALARLATRTRRPSYYYLLALTASDIIIQVVIV-FAGFLLQGAVLARQVPQAVVRTANILEFAANHASVWIAILLTVDRYTALCHPLHHRAASSPGRTRRAIAAVLSAALLTGI-PFYWWLDMWRDTDSPR-----------TLDEVLKWAHCLTVYFIPC---------GVFLVTNSAIIHRLRR---------RGRSGLQPRV--GKSTAILLGITTLFTLLWAPRVFVMLYHMYV-----APVHRDWRVHLALDVANMVAMLHTAANFGLYCFVSKTFRATVRQVIHDAYLPCTLASQPEGMAAKPVMEPPGLPTGAEV |
| 3VGA Chain:A ((33-305)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVLVL----TQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVG---LFALCWLPLHIINCFTFFCPDCSHAPL---WLMYLAIVLSHT----NSVVNPFIYAYRIREFRQTFRKIIRSHVL---------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174075 for 1584 contacts (-109.9/contact) +
2D Compatibility (PS) -22846 + (NN) -1140 + (LL) 13548
1D Compatibility (HY) -21200 + (ID) 3050
Total energy: -208763.0 ( -131.79 by residue)
QMean score : 0.221
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