Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTGGGNITEITYFILLGFSDFPRIIKVLFTIFLVIYITSLAWNLSLIVLIRMDSHLHTPMYFFLSNLSFIDVCYISSTVPKMLSNLLQEQQTITFVGCIIQYFIFSTMGLSESCLMTAMAYDRYAAICNPLLYSSIMSPT------LCVWMVLGAYMTGLTASLFQIGALLQLHFCGSNVIRHFFCDMPQLLILSCTDTFFVQVMTAILTMFFGIASALVIMISYGYIGISIMKITSAKGRSKAFNTCASHLTAVSLFYTSGIFVYLSSSSGGSSSFDRFASVFYTVVIPMLNPLIYSLRNKEIKDALKRLQKRKCC
4LDE Chain:A ((200-365))------------------------------------------NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIV-----SGLTSFL-----PIQMHWYRATHQEAINCYAEE----TCCD-FFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKFALKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRSPDFRIAFQELLC


General information:
TITO was launched using:
RESULT:

Template: 4LDE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122918 for 1082 contacts (-113.6/contact) +
2D Compatibility (PS) -16137 + (NN) -222 + (LL) 5396
1D Compatibility (HY) -11200 + (ID) 2200
Total energy: -147281.0 ( -136.12 by residue)
QMean score : 0.163

(partial model without unconserved sides chains):
PDB file : Tito_4LDE.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4LDE-query.scw
PDB file : Tito_Scwrl_4LDE.pdb: