Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEETNNSSEKGFLLLGFSDQPQL---ERFLFAIIL-YFYVLSLLG---NTALILVCCLDSRLHTPMYFFLSNLSCVDICFTTSVAPQLLVTMNKKDKTMSYGGCVAQLYVAMGLGSSECILLAVMAYDRYAAVCRPLRYI------AIMHPRF-------CASLAGGAWLSGLITSLIQCSLTVQLPLCGHRTLDHIFCEVPVLIKLACVDTTFNEAELFVASVVFLIVPVLLILVSYGFITQAVLRIKSAAGRQKAFGTCS------SHLVVVIIFYGTIIFM-YLQPANRRSKNQG-KFVSLFYTI------VTPLLNPIIYTLRNKDVKGALRTLILGSAAGQSHKD |
| 1U19 Chain:A ((28-320)) | ------------------EAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGW-SRYIPEGMQCS-------CG---IDYYTPH----------EETNNESFVIYMFVVHFIIPLIVIFFCYG---QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194468 for 1896 contacts (-102.6/contact) +
2D Compatibility (PS) -26137 + (NN) -4920 + (LL) 3608
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -227267.0 ( -119.87 by residue)
QMean score : 0.136
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