Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMIKKNASSEDFFILLGFSNWPQLEVVLFVVILIFYLMTLTGNLFIIILSYVDSHLHTPMYFFLSNLSFLDLCHTTSSIPQLLVNLRGPEKTISYAGCMVQLYFVLALGIAECVLLVVMSYDRYVAVCRPLHYTVLMHPRFCHLLAAASWVIGFTISALHSSFTFWVPLCGHRLVDHFFCEVPALLRLSC-VDTHA------NELTLMVMSSIFVLIPLILILTAYG----AIARAVLSMQSTTGLQKVFRTCGAHLMVVSLFF----IPVMCMYLQPPSENSPDQGKF---IALFYTVVTPSLNPLIYTLRNKHVKGAAKRLLGWEWGK |
3CAP Chain:A ((55-314)) | ------------------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAA--------PPLVGWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -205732 for 1734 contacts (-118.6/contact) +
2D Compatibility (PS) -25082 + (NN) -11041 + (LL) 5196
1D Compatibility (HY) -20400 + (ID) 3000
Total energy: -260059.0 ( -149.98 by residue)
QMean score : 0.205
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