Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQLNNNVTEFILLGLTQDPFWKKIVFVIFLRLYLGTLLGNLLIIISVKTSQALKNPMFFFLFYLSLSDTCLSTSITPRMIVDALLKKTTISFSECMIQVFSSHVFGCLEIFILILTAVDRYVDICKPLHYMTIISQWVCGVLMAVAWVGSCVHSLVQIFLALSLPFCG-----PNVIN-HCFCDLQPLLKQACSETYVVNLLLVSNSGAICAVSYVMLIFSYVIFLHSLRNHSAE-----VIKKALSTCVSHIIVVILFF--------GPCIFMYTCLATVF-PMDKMIAVFYTVGTSFLNPVIYTLKNTEVKSAMRKLW--SKKLITDDKR |
| 3PQR Chain:A ((44-326)) | ---------------------------MFLLIMLGFPINFLTLYVTVQ-HKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGEN---HAIMGVAF------TWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVH-----FIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PQR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -244450 for 1930 contacts (-126.7/contact) +
2D Compatibility (PS) -26451 + (NN) -7088 + (LL) 3648
1D Compatibility (HY) -24800 + (ID) 2800
Total energy: -301941.0 ( -156.45 by residue)
QMean score : 0.272
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