Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEEAILLNQTSLVTYFRLRGLSVNHKARIAMFSMFLIF-YVLTLIG---NVLIVITIIYDHRLHTPMYFFLSNLSFIDVCHSTVTVPKMLRDVWSEEKLISFDACVTQMFFLHLFACTEIFLLTVMAYDRYVAICKPLQYMIVMNWKVCVLLAVALWTGGTIHSIALTSLTIKLP-YCGPDEIDNFFCDVPQVIKLAC-ID--TP--------YVLEILIVSNSGLISVVCFVVLVVSYAVILVSLRQQISKGKWKALSTCAAHLTVVTL--------FLGHCIFIYSRPSTSL-PEDKAVSVFFTAVTPLLNPIIYTLRNEEMKSALNKLVGRKERKEEK |
3C9L Chain:A ((32-317)) | --------------------------AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-----NFRF-----------GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNDDE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -218873 for 2016 contacts (-108.6/contact) +
2D Compatibility (PS) -26030 + (NN) -6050 + (LL) 4512
1D Compatibility (HY) -22800 + (ID) 3050
Total energy: -272291.0 ( -135.06 by residue)
QMean score : 0.266
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