Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVTEFIFLGLSDSQELQTFLFMLFFVFYGGIVFGNLLIVITVVSDSHLHSPMYFLLANLSLIDLSLS----SVTAPKMITDFFSQRKVISFKGCLVQIFLLHFFGGSEMVILIAMGFDRYIAICKPLHYTTIMCGNACVGIMAVAWGIGFLHSVSQLAFAVHLPFCGPNEVDSFYCDLPRVIKLACTDTYRLDIMVIANSG-------VLTVCSFVLLIISYTIILMTIQHCPLDK-----SSKALSTLTAHITVVLLFFGPCVFIYA----WPFPIKSLD-----KFLAVFYSVITPLLNPIIYTLRNKDMKTAIRRLRKWDAHSSVKF |
| 1LN6 Chain:A ((55-313)) | ----------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYF----VFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGV-AFTW-------VMALACAAP-PLVGWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVVATTLCCGKNPLG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LN6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -209237 for 1731 contacts (-120.9/contact) +
2D Compatibility (PS) -21664 + (NN) 19168 + (LL) 4084
1D Compatibility (HY) -21600 + (ID) 2800
Total energy: -232049.0 ( -134.05 by residue)
QMean score : 0.104
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