Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAEMNLTLVTEFLLIAFTEYPEWALPLFLLFLFMYLITVLG---NLEMIILILMDHQLHAPMYFLLSHLAFMDVCYSSITVPQMLAVLLEHGAALSYTRCAAQFFLFTFFGSIDCYLLALMAYDRYLAVCQPLLYVTILTQQARLSLVAGAYVAGLISALVRTVSAFTLSFCGTSEIDFIFCDLPPLLKLTCG--------ESYTQEVLIIMFAI-FVIPASMVVILVSYLFIIVAIMGIPAGSQ-AKTFSTCTSHLTAVSL------------FFGTLIFMYLRGNSDQSSEKNRVVSVLYTEVIPMLNPLIYSLRNKEVKEALRKILNRAKLS |
1GZM Chain:A ((42-326)) | ----------------------------MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTWVMALACAAPPLV--------GWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIP--LIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD-FGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKND |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GZM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -247561 for 2006 contacts (-123.4/contact) +
2D Compatibility (PS) -26529 + (NN) -9381 + (LL) 4576
1D Compatibility (HY) -6400 + (ID) 550
Total energy: -285845.0 ( -142.50 by residue)
QMean score : 0.314
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