Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDSGPLWDANPTPRGTLSAPNATTPWLGRDEELAKVEIGVLATVLVLATGGNLAVLLTLGQLGRKRSRMHLFVLHLALTDLAVALFQVLPQLLWDITYRFQGP----DLLCRAVKYLQVLSMFASTYMLLAMTLDRYLAVCHPLR--SLQQPGQSTYLLIAAPWLLAAIFSLPQVFIFSLREVIQGSGVLDCWADFG---FPWGPRAYLTWTTLAIFVLPVTMLTACYSLICHEICKNLKVKTQAWRVGGGGWRTWDRPSPSTLAATTRGLPSRVSSINTISRAKIRTVKMTFVIVLAYIACWAPFFSVQMWSVWDKNAPDEDSTNVAFTISMLLGNLNSCCNPWIYMGFNSHLLPRPLRHLACCGGPQPRMRRRLSDGSLSSRHTTLLTRSSCPATLSLSLSLTLSGRPRPEESPRDLELADGEGTAETIIF |
2YCW Chain:A ((17-283)) | ---------------------------------------LMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLL-VVP---FGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAK-VIICTVWAISALVSFLPIMMHWWRD--EDPQALKCYQDPGCCDFV-TNRAYAIASSIISFYIPLLIM--------------IFVALRVYREAKEQIRKIDRASKRKRVMLMR---------------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLV-PDWLFVAFN---WLGYANSAMNPIIYCRSPDFRKAFKRLLAF---------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185297 for 1906 contacts (-97.2/contact) +
2D Compatibility (PS) -26824 + (NN) -12730 + (LL) 7144
1D Compatibility (HY) -26400 + (ID) 4000
Total energy: -248107.0 ( -130.17 by residue)
QMean score : 0.246
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