Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVGDTLKLLSPLMTRYFFLLFYSTDSSDLNE----NQHPLDFDEMAFGKVKSGISFLIQTGVGILGNSFLLCFYNLILFTGHKLRPTDLILSQLALANSMVLFFKGIPQTMAAFGLKYL-LNDTGCKFVFYYHRVGTRVSLSTICLLNGFQAIKLNPSICRWMEIKIRSPRFIDFCCLLCWAPHVLMNASVLLLVNGPLNSKNSSAKNNYGYCSYKASKRF--SSLHAVLYFSPDFMSLGFMVWASGSMVFFLYRHKQQVQHNHSNRLSCRPSQEARATHTIMVLVSSFFVFYSVHSFLTIWTTVVANPGQWIVTNSVLVASCFPARSPFVLIMSDTHISQFCFACRTRKTLFPN-----------------LVVMP- |
| 1U19 Chain:A ((4-349)) | MNGTEGP---------NFYVPFSNKTGVVRSPFEAPQYYLA-EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRT-----PLNYILLNLAVADLFMVFG-GFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVL----AIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPE---GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESA-------TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158842 for 2621 contacts (-60.6/contact) +
2D Compatibility (PS) -31771 + (NN) 4974 + (LL) 1472
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -186817.0 ( -71.28 by residue)
QMean score : 0.127
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