Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKSQLVKKVFDSVAYRYDIMNDIISLGIHRLWKDKMVNSVHFTKNSQVLDVAGGTGDIAIRIVRREPSVQVTVCDINQNMLSRGRNKAINSNQLNFNWVCANAESLPFEDSEFDCCTIAFGIRNVS--DRKKALSEIHRVLKPNGQFICLEFAPMHYKNEIFTKLYDLYSLKVIPKIGNIVTKDESPYQYLVRSIREFPVQTDFKMEIEEVGFKKVKFHNMSYGIVALHTGTK
4MWZ Chain:A ((26-162))
--------------AYEFIFGEDYISSG-GIIATTKILSDIQLDANSKVLDIGSGLGG-GCKYINEKYGAHVHGVDICEKMVTIAKLRNQDKAKIEFE--AKDILKKDFPESTFDMIYSRDSILHLSYADKKMLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLMPIQEYGDLIKSCKFQNVEAKDISDYWLELLQLELSKLEEKKEEFLKVYSIKEYNSLK
General information:
TITO was launched using:
RESULT:
Template:
4MWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64665 for 1074 contacts (-60.2/contact) +
2D Compatibility (PS) -14934 + (NN) -5169 + (LL) 1948
1D Compatibility (HY) -10400 + (ID) 1600
Total energy: -94820.0 ( -88.29 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_4MWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MWZ-query.scw
PDB file :
Tito_Scwrl_4MWZ.pdb
: