Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDIVLATGGTGGHIFPAITLARAIKRQ-GYDSILFADKKTGK-----NTD-V-K-DYTLPLNKPGGNKFRFFLLLIYSCVLALYQIRKLKPKLVIGFGGY-ASFPTLLAAKVLSIPIILHEQNAVLG---------RVNKFFFNSAELIATSFPETKYAK------GNKCVFIGN-FVDIKAKSHS-------STKKILTVLIIAGSQGANFFDDVVSSVICNLPIEIRKKIRVVQQCMKKNM---NKVEGLYKGGQVICELSEFF--DDMGSRLTDAHLVISRAGATSIAEITLARRPAIYI-PYPCSKDDHQFYNAEYIKDSGAAVVVEQNSEVKKNLTKLLVNLLGDSQKLRDMANNTKKIRIKNGVTEFIRIVIHKLG |
| 1V4V Chain:A ((6-365)) | KRVVLAFGTRP-EATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQ---ALPDLAARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKANLLKEGKREEGILVTGQTGVDAVLLAAKLGRLPEGLPEGPYVTVTMHRRENWPLLS-DLAQALKRVAEA-FPHLTF-VYPVHLNPVVREAVFPVLK-GVRNFVLLDPLEYGSMAALMRASLLLVTDSG-GLQEEGAALGVPVVVLRNVTE--------RPEGL-KAGILKLAG-TD--PEGVYRVVKGLLENPEELSRMRKAKNPYGDGKAGLMVARGVAWRLG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V4V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -215186 for 2676 contacts (-80.4/contact) +
2D Compatibility (PS) -34094 + (NN) -13615 + (LL) 988
1D Compatibility (HY) -4800 + (ID) 2200
Total energy: -268907.0 ( -100.49 by residue)
QMean score : 0.515
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