Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNIKLYYSSYLRYNIRSSLYIPFKPNILVKLDILKNEVLSLKTVSPEKVVEVSNLID-KFRLKILTDFQNFEKQWFQEFKNTWKQKLMPNMRSEYLGLHCTKIY
1T40 Chain:A ((248-296))
---------------------------VLIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRNWRVCALLSCTSHKDYPFHEEF---------
General information:
TITO was launched using:
RESULT:
Template:
1T40.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20122 for 226 contacts (-89.0/contact) +
2D Compatibility (PS) -4972 + (NN) 480 + (LL) 2472
1D Compatibility (HY) -4000 + (ID) 550
Total energy: -26692.0 ( -118.11 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_1T40.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T40-query.scw
PDB file :
Tito_Scwrl_1T40.pdb
: