Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MVKLTTKIASLKLFASYAIATYILVMLTSALNLFKGYVADTFYIAETLLIILTIILIIILTTEQTWKHHDLWRRIVEVLLLLMALTGNVFTLLMFVSIRRYQRTSQIHSYNGWESFIRKTTRHRIAIIGLLILVYMLTLSIVSQFTFDTTLATKNQFNALLHGPSLAYPFGTDDFGRDLFTRVVVGTKLTFSISIISVVIAVIFGVLLGTIAGYFNHIDNLIMRILDVVFAIPSLLLAVAIIASFGASIPNLIIALSIGNIPSFARTMRASVLEIKRMEYVDAARITGENTWNIIWRYILPNAIAPMIVRFSLNIGVVVLTTSSLSFLGLGVAPDVAEWGNILRTGSNYLETHSNLAIVPGVCIMFVVLAFNFIGDAVRDALDPRIH |
| 3BXV Chain:A ((1-308)) | MPKPYIAINMADLKNEPKTFEMFSAVGPKVCMVTARHPGFVG--------------FQNHVQIGVLPFGERFGGAKMD----------MTKESSTVRVLQYTMWKDWKDHEEMHRQNWSYLFRLCYSCASQMVWGPWEPIYEIKYADMPINT-EMTDFTAVVGKKFAEGKPLEIPVISQPYGK----RVVAFGEHTV-------------------IPGKEEQFEDAIIKTLEMFKRAPGFL-GAMLLKEIGVS--------GIGS------------FQFGSKGFHQLLESPGSLEPD-------PNNVMYQAPEAKPT------PPQYIVHVEWANLDALQFGMGRVLLSPEYREVHDEALDTLIYGPYIRIINPVMEGTFWREYLNE--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3BXV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -266820 for 2400 contacts (-111.2/contact) +
2D Compatibility (PS) -31980 + (NN) -2594 + (LL) 10152
1D Compatibility (HY) -4000 + (ID) 2250
Total energy: -297492.0 ( -123.96 by residue)
QMean score : 0.181
|
|
|