Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQNKRLITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIVVALVKNLLNYLFSMGDPVGPFANFLA-GASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLYGMIFNLADIANNLKVIIVSGIIPFNIIKG--IVISIVFILLYRRLANFLKRI--
3RLB Chain:A ((17-192))
--NVRLLTEIAFMAALAFIISLIPNTVY---GWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLK-----LAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSNY
General information:
TITO was launched using:
RESULT:
Template:
3RLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154773 for 1349 contacts (-114.7/contact) +
2D Compatibility (PS) -17190 + (NN) -3094 + (LL) 960
1D Compatibility (HY) -14400 + (ID) 1300
Total energy: -189797.0 ( -140.69 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_3RLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RLB-query.scw
PDB file :
Tito_Scwrl_3RLB.pdb
: