Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIFGELGSLGHLFKKTQELEILHGYLQDVMQKGSEANQRVLNLAINTEFQVPLEHGIFSIEQSYCLEHAKEGEKGFFESHRQYVDFQLIIKGVEGAKVA-DINRAVIKTPYDEKRDLIVYEPVSEASFLHLDAGMLAIFLENDAHALRFYGESFEKYREEPIFKAVVKMPKGLIKLKL
1JOP Chain:A ((1-155))
-MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDINDQIYMNVM-----------------------EPKAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCC-----------VIKKLVVKVPVKLI----
General information:
TITO was launched using:
RESULT:
Template:
1JOP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55554 for 1014 contacts (-54.8/contact) +
2D Compatibility (PS) -14390 + (NN) 1848 + (LL) 3012
1D Compatibility (HY) -9600 + (ID) 1550
Total energy: -76234.0 ( -75.18 by residue)
QMean score : 0.205
(partial model without unconserved sides chains):
PDB file :
Tito_1JOP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JOP-query.scw
PDB file :
Tito_Scwrl_1JOP.pdb
: