Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------MKKGSLAIVLGSLLASG----TFYTALADGMPMKQQHNNMGESVELHFHYPIKGKQEPKNN---HLVVLIDPKIEANKVIPENYQKEFEKSLFLQLSNFLERKGYSVSQFKDVSEIPQDIKEKALLV----LRMDGNVAILEDIVEESDALSEEKVIDMSSGYLNLNFVEPKSEDIIHSFG-IDVSKIKAVIERVELRRTNSGGFVPKTFVHRIKETDHDRAIKKIMN------QAYHKVMAHITKELSKKHMERYEKVSSEMKKRK----------------------- |
| 3U61 Chain:C ((5-323)) | SMITVNEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVID---EFDRSGLAESQRHLRSFMEAYSSN-----CSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYSSKGVLDAGILSLVTNDRGAIDDVLESLKNKDVKQLRALAPKYAADYSWFVGKLAEEIYSRVTPQSIIRMYEIVGENNQYHGIAANTELHLAYLFIQLACEMQW |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U61.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21398 for 1641 contacts (-13.0/contact) +
2D Compatibility (PS) -25775 + (NN) -11640 + (LL) 704
1D Compatibility (HY) -4400 + (ID) 1500
Total energy: -64009.0 ( -39.01 by residue)
QMean score : 0.320
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