Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDALFNYKEFVRLSHEGNIKYEKLKVPKHTDLVDTASQRNNHVYLIVEGFVSISMNP--QSNSIYTVLGKGSFVNYYSLFQGNVDDFLFTAISPCTIYKYSFKDLEYFLSMFPENFGFQFFIMRDLARHAFF----KSLFAETSSSDKLELSFSNMGKLHGTLYEKDSVILPKEMRTSTIAAYSNLSKSSFYKQLTLLKEHGKIWKKGKEW-VVKDKGLYNYVKVRQFDD
3E6C Chain:C ((28-229))
----------------YTQMGLIRDFAKGSAVIMPGE-EITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPTG---NNIYATAMEPTRTCWFSEKSLRTVFRTDE---DMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRILRLFYELCSSQGKRVG-DTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKHLSEQT----
General information:
TITO was launched using:
RESULT:
Template:
3E6C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84173 for 1326 contacts (-63.5/contact) +
2D Compatibility (PS) -20512 + (NN) -2677 + (LL) 1864
1D Compatibility (HY) -9200 + (ID) 1300
Total energy: -115998.0 ( -87.48 by residue)
QMean score : 0.357
(partial model without unconserved sides chains):
PDB file :
Tito_3E6C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E6C-query.scw
PDB file :
Tito_Scwrl_3E6C.pdb
: