Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKSERLNDMMLFLND---KNVFQLSDIMTKYDISRSTAIRDVKSLEEIGMPIYSERGRNGHYQVLRNRLLSPIVFNIDEVFALYFSMLTLKAYETTPFHLSVEKLKTKFERCLSAEKIEMLRKTEEVFSLGYIKHNNQCEFLDVILQFTMEEKVCQINYDKKGIEKTYVVQFYNISSAYGQWYVTSYNFETKRMQVFRCDRILELEENHAFEAKKLTDLKSETDYLYKKKDAINFEVEIASNGVDLFFKENYPSMKLNQEQGRNVIRGFYNRGEEPFIINYLLGFGDKINMVQPDSLKEMLLNELKSLQNHLQKLS |
1QGP Chain:A ((140-198)) | ------EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGK-LQKEAGTPPLWKIA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1QGP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -38634 for 387 contacts (-99.8/contact) +
2D Compatibility (PS) -5742 + (NN) -36 + (LL) 20168
1D Compatibility (HY) 400 + (ID) 500
Total energy: -24344.0 ( -62.90 by residue)
QMean score : 0.625
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