Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDD--YTIINAESAFTNATK-AENKMW-RIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNA------------DAPLETTIKGMKTVLLGYDCRMSQQS-P----------AYLERIVKDVKKYK-KEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVE-KYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF |
2WDC Chain:A ((79-303)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------GTPLAYLLSYVDFVELARTF----------------GPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMV-S-HWEWTLGRERVEELLGL---FRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLD-------AALAERI--RGIDLILSGHTHDLTPRPWRVGKTWIV--------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2WDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -42145 for 1414 contacts (-29.8/contact) +
2D Compatibility (PS) -19964 + (NN) 1387 + (LL) 16668
1D Compatibility (HY) -7200 + (ID) 1400
Total energy: -52654.0 ( -37.24 by residue)
QMean score : 0.168
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