Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNVKVYVTLKKSVLDPQGVAVKDAAKSMGYEEVEDVRIGKFMELKVAKSDRDIHEVLNEMCDKLLTNPVMEDYRYEIEEA
1T4A Chain:A ((1-80))
MYKVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYMELTIEKSDRDLDVLVKEMCEKLLANTVIEDYRYEVEE-
General information:
TITO was launched using:
RESULT:
Template:
1T4A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2873 for 418 contacts (6.9/contact) +
2D Compatibility (PS) -7881 + (NN) 2914 + (LL) 104
1D Compatibility (HY) 1200 + (ID) 50
Total energy: -840.0 ( -2.01 by residue)
QMean score : 0.089
(partial model without unconserved sides chains):
PDB file :
Tito_1T4A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T4A-query.scw
PDB file :
Tito_Scwrl_1T4A.pdb
: