Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLSNKQTVLCIEEMAKMFPAAHCELVHKNTFELLVAVVLSAQCTDVLVNRVTASLFEKYHSPEDYLAVPLEELMEDIRSIGLYRNKAKNIQGLSEKILTEFNGEVPKTHAELESLPGVGRKTANVVLSVGFGVPAIAVDTHVERISKRLGICRWKDSVVE------VEETLKRKLPKELWSDAHHYMIFFGRYHCKARNPECPTCPLLYLCREGKKQAKVRGFDG
4YOQ Chain:A ((37-226))
---------------------------RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY-SRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLV--TDDIAKCSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQ-------------
General information:
TITO was launched using:
RESULT:
Template:
4YOQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86555 for 1324 contacts (-65.4/contact) +
2D Compatibility (PS) -18481 + (NN) -10671 + (LL) 3584
1D Compatibility (HY) -12800 + (ID) 2200
Total energy: -127123.0 ( -96.01 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_4YOQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YOQ-query.scw
PDB file :
Tito_Scwrl_4YOQ.pdb
: