Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGYRKLGRTSSQRKALLRDLATDLIVFERIETTEARAKEIRKVVEKLITSGKKGDLHARRQAAAFIRHEVVEVVQVDAKGKDGSTVKKNRPVYALQKLFDDVAPRYAERQGGYTRILKKGPRRGDGAPMVIIELV
2J28 Chain:N ((8-116))
---RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRR--LAFARTRDNEIVA---------------------KLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELV
General information:
TITO was launched using:
RESULT:
Template:
2J28.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32493 for 749 contacts (-43.4/contact) +
2D Compatibility (PS) -11857 + (NN) -5102 + (LL) 1308
1D Compatibility (HY) -8800 + (ID) 2900
Total energy: -59844.0 ( -79.90 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_2J28.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J28-query.scw
PDB file :
Tito_Scwrl_2J28.pdb
: