Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQAQYAGTGRRKNAVARVRLVPGTGKITINKKDVEEYIPHADLRLVINQPFAVTSTQGSYDVFVNVVGGGYAGQSGAIRHGISRALLEVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR
4DV2 Chain:I ((3-128))
----QYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGHFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR
General information:
TITO was launched using:
RESULT:
Template:
4DV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36028 for 907 contacts (-39.7/contact) +
2D Compatibility (PS) -13099 + (NN) -3541 + (LL) 616
1D Compatibility (HY) -7200 + (ID) 3250
Total energy: -62502.0 ( -68.91 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_4DV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DV2-query.scw
PDB file :
Tito_Scwrl_4DV2.pdb
: