Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIKTKFSDPLEQLAKKRKRKTLFKTVVLALITVLLVVGIAFKGFTYLTSKNGQKTYHNFELLSEIAYPNISYDSLYYQPSGQFTGKVHADRFKDIDGVQIPYSSFEENYSISGTFGTNADEKSEKNGLYDRGTRQKVPQFFNKNVKYKKGEAKTTPTNDLKYVNKLNNDLIEIAITFDKSYSYKEIKTMIPNNIKQNWLWIGTSTELDTSYWPTKYQFGTDPETLNTPQIFIDKIKENLKGNSKVYFNNINIYSDLEKYAKKYDKVNNSDKLKFSGIILTGKAENFKQLKEKEWVHASSIGANIEYKPYYKLDKE |
2VCL Chain:A ((166-224)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QYLDTFKLYLTKYKEMIDNNKPVG-EDTTVYSDFDTYMTEL--VRGYMKNKFG----EGRSEAFVNDFLFSYK-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VCL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 13000 for 224 contacts (58.0/contact) +
2D Compatibility (PS) -5877 + (NN) -905 + (LL) 14912
1D Compatibility (HY) -4800 + (ID) 900
Total energy: 15430.0 ( 68.88 by residue)
QMean score : 0.231
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