Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFKKIILSIATIAATASLAVSVQASEKVELKVATDSDTAPFTYQKDGKFKGYDVDVVKAVFKG-SKYKVTFKTVPFDTISTGIDAGKFDLSANDFSYNKERAEKYLFSDPISRSNYAV---VGKKGSHYKSLSDLSGKSTEVLSGVNYAQVLENWNKNHPNKKPIKIKYVSGTTGVTSRLKNIESGKIDFILYDAISSDYIVKDQSLNLSVSPLKGKIGNNKDGLEYLLLPKDKKGKTLQKFINKRIKVLKENGTLARLSKQYFGGDYVSNIDK |
2O1M Chain:A ((36-245)) | ----------------------------------------------GDLTGYDVELIKELDKRLPHYKFTFKTMEFSNLLVSLGQHKVDIVAHQMEKSKEREKKFLF-NKVAYNHFPLKITVLQNNDTIRGIEDLKGKRVITSATSNGALVLKKWNED--NGRPFEIAYEG--QGANETANQLKSGRADATISTPFAVDFQNK-------TSTIKEKTVGNVLSNAKVYFMFNKNEQTLSDDIDKALQEIIDDGTLKRLSLKWLGDDY------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2O1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -26878 for 1475 contacts (-18.2/contact) +
2D Compatibility (PS) -22548 + (NN) -7461 + (LL) 4640
1D Compatibility (HY) -11200 + (ID) 3100
Total energy: -66547.0 ( -45.12 by residue)
QMean score : 0.457
|
|
|