Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYKDDSLTLHTDLYQINMMQVYFNKGIHNKRAVFEAYFRKVPFE-NGYAVFAGLERIVRYLENLSFSDSDLSYLEE------L-GYPEEFLDYLKNLKMELTVKSAKEGDLVFA-NEPLVQIEGPLAQCQLVETAILNIINYQ------------T---LVA-------TKAARIRSVIEDEPLLEFGTRRAQEMDAA---IWGTRAAIIGGANATSNVRAGKIFNIPVSGTHAHALVQTYGD------D-----YQAFKAYAETHKD--CVFLVDTYDTLRVGVPNAIRVAKEMGEKINFLGVRLDSGDLAYLSKKVRQQLDDAGF-PNAK-IYASNDLDENTILNLKM--QKAKIDVWGVGTKLITAY-----DQPALGAVYKIVSIETDAGSMRDTIKLSNNAEKVSTPGKKQVWRITSRAKGKSEGDYITFADTDVTQLDEIEMFHPTYTYINKTVRDFDAVPLLVDIFDKGKLVYQLPSLQEIQEYGRKEFDQLWDEYKRVLNPQDYPVDLARDVWQNKMDLIDRIRKEALAKGEVR |
| 1YBE Chain:A ((30-421)) | ------SLIDTDFYKLLMLQMIWKLYP-EVDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQ-------LPEYELFKRDGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMRSLGYFTLDVLYARAKAKMWEKVERLRE-LPGLRISDFGTRRRHSFLWQRWCVEALKEGIGPAFTGTSNVLLAMDSDLEAVGTNAHELPMVVAALAQTNEELAAAPYQVLKDWNRLYGGNLLIVLPDAFGTAAF-LRNAPEWV------ADWTGFRPDSAPPIEGGEKIIEWWRKMGRDPRTKMLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCAP-LKPISIVCKVSDANG-----RPAVKLSDNPQKATGDPAEVERYLKFFGEED------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YBE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116435 for 2623 contacts (-44.4/contact) +
2D Compatibility (PS) -34708 + (NN) -7673 + (LL) 9524
1D Compatibility (HY) -13600 + (ID) 3900
Total energy: -166792.0 ( -63.59 by residue)
QMean score : 0.394
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