Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVKLFAIHLFFIVISF-GIKYYHLQGPNLIWNMTLALIALDFAYLTSLFKKKILIGLFALAWFFFYPNTFYM----LTDIIHMHFVGDVLYNKTNLILYILYVSSILFGFLSGIESFSVIMRKFRISNIFLRWGII-GIVSFVSSFGIHIGRYARLNSWDILTK------PQVVINELLAVPSRDSFHFILGFTFLQVLCLIFMDYSAGKKLEK
3L56 Chain:B ((541-745))
GPESVLVNTYQWIIRNWETVKIQWSQDPTMLYNK------MEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTAGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIG----QGDVVLVMKRKRDSSILT
General information:
TITO was launched using:
RESULT:
Template:
3L56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -204011 for 1447 contacts (-141.0/contact) +
2D Compatibility (PS) -19103 + (NN) 4291 + (LL) 1388
1D Compatibility (HY) -1600 + (ID) 1600
Total energy: -220635.0 ( -152.48 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_3L56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L56-query.scw
PDB file :
Tito_Scwrl_3L56.pdb
: