Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPELSKRRQRQLKAQGYDLAFLSRIQPQGNIDFKKDDRSWMSGDGHHTVLHFYEYPSEDLDRFWLSDLMLIPGTRSFLSLYRANNRELKQEIKDAIEEKSTRI----TGNSKIVDNQQELDEIKDLTQLDREITKKNIAMLG----MYVRNYSSSSTKEALFKKVEDIKDKTSNFKSTILSGELDFEYHAPFIPAQYQIDLPNRRRGIPIRAHDLAGGYFFNHTKLEDQRGVYMGWTPTKGAVNFNFLERDERRTRSFMILSGNPKMGQRSFLLKHTDGLYAKGNYIRNFDANGTFLDQTRQQHGLILDLSGEANRINIFQVFPTVTNEEGTEIDKKKSYKLHIEKLKSIFKLLNSEVTGDDLTTLGDMLNDFYIEEGLWARNPKLNPEKLKATDLVNDDYPILSDFILFADDYKRSLMAQSKPDEIEIKSVNRIYKTFNELLTTNAEMFEGTTEFQDISSEQVVTFDLSGLKGTPNLLNAQIFSVLSLVSADIVNNGKRSKQLLKANPHLTEMDMEHYIVNISEAQTLINPKYESSVELLADMIDTMGENFAGVVLSVNSLRGILFEAGAGNHKDPYVTAVQRIFGLMQYRVFAQTDETTIPLLANALTGSMNQSELETLPRLAKGQLFMNIAGVGNLVFNQQLLAPEIKRYGGIQ |
| 2CD9 Chain:A ((205-295)) | -----------------------------------------------------------------------------LEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIRILWE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CD9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 15938 for 462 contacts (34.5/contact) +
2D Compatibility (PS) -8527 + (NN) 1547 + (LL) 29904
1D Compatibility (HY) -4400 + (ID) 1250
Total energy: 33212.0 ( 71.89 by residue)
QMean score : 0.287
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