Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFAKEYPTTVLLVSLTTLVFLLMQLTYGSQAESSQVIFQFGGIQGDYLKAYPT---NLWRLISPIFVHIGWEHFLLNGLALYFVGQMGESIWGSLRFLILYILSGLM-GNIFTLFFTPHVVAAGASTSLFGVFSAIAIAGYFGKNP----YLKQVGKSYQVMILLNLFFNIFTPGVSLAGHVGGLVGGVLVAIFLTKQNGSLLFKTWQSILALMIFIIVSISLIGLSLV
3ZMJ Chain:A ((4-174))
--------PVTWVMMIACVVVFIAMQIL-GDQEVMLWLAWPFD----------PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWF--GGLSGVVYALMGYVWLRGE--RDPQSGIYLQRGLIIFALIWIVAGWFDL-GMSMANGAHIAGLAVGLAMAFVDSL--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3ZMJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125625 for 1284 contacts (-97.8/contact) +
2D Compatibility (PS) -16447 + (NN) -4202 + (LL) 5552
1D Compatibility (HY) -18400 + (ID) 1950
Total energy: -161072.0 ( -125.45 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_3ZMJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZMJ-query.scw
PDB file :
Tito_Scwrl_3ZMJ.pdb
: