Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKLGCLGVLMSIPFFIVVIVTIIFSSSQGDCQVTPDLSTQFVTSSDSASQTDWTKKGSIANVTAGKVFHAWVSKGLSGASAAGIVGWVNSEGGFGKYSWNYRYVTTAELKNEGYTFYNPAKLGYQIMKSVGTVGK
3VLB Chain:B ((83-154))
------------------------------------------------SSIPTTWKWSYSGSSIVADVAYDTFLAETASGSSKYEIMVWLAALGGAGPISSTGSTIATPTIAGVNWKLYSGPNGDTTVYSFVADSTT
General information:
TITO was launched using:
RESULT:
Template:
3VLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2288 for 322 contacts (-7.1/contact) +
2D Compatibility (PS) -7789 + (NN) -1305 + (LL) 3472
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -11910.0 ( -36.99 by residue)
QMean score : 0.045
(partial model without unconserved sides chains):
PDB file :
Tito_3VLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VLB-query.scw
PDB file :
Tito_Scwrl_3VLB.pdb
: