Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKIKIVTDSSITIEPELIKELDITVVPLSVMIDGT-LYSDN-DLKAQGEFLNLMRGSKELPKTSQPPVGVFAEIYEKLMNEGAEHIIAIHLTHTLSGTIEASRQGANIAGADVTVIDSTFTDQCQKFQVVEAAKLAKEGADLDTILARVEEVRQ--KSELFIGVSTLENLVKGGRIGRVTGLLSSLLNIKVIMELTNHELVPIVKGRGLK-TFSKWLDNFVESAQTRKIAEIGISYCGKADMANNFKEKLAV--LGAPISVLETGSIIQTHTGEDAFAVMVRYE |
| 1MGP Chain:A ((25-308)) | HMKVKILVDSTADVPFSWMEKYDIDSIPLYVVWEDGRSEPDEREPEEIMNFYKRIREAGSVPKTSQPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEVDIPVYVVDTLLASGAIPLPARVAREMLENGATIEEVLKKLDERMKNKDFKAIFYVSNFDYLVKGGRV---------LLKIRVCLHIENGELIPYRKVRGDKKAIEALIEKLREDTPEGSKLRVIGVHADNEAGVVELLNTLRKSYEVVDEIISPMGKVITTHVGPGTVGFGIEVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MGP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126985 for 2367 contacts (-53.6/contact) +
2D Compatibility (PS) -30129 + (NN) -15880 + (LL) 296
1D Compatibility (HY) -15600 + (ID) 3200
Total energy: -191498.0 ( -80.90 by residue)
QMean score : 0.486
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