Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYLEQLKEVNPLTICITNNVVKNFTANGLLALGASPAMSECIEDLEDLLKVANALLINIGTLTKESWQLYQEAIKIANKNQVPVVLDPVAAGASRFRLEVSLDLLKNYSISLLRGNGSEIAALVGEKQASKGADGGKVADLESIAVKANQVFDVPVVVTGETDAIAVRGEVRLLQNGSPLMPLVTGTGCLLGAVLAAFIGSSDRSDDLACLTEAMTVYNVSGEIAEKVAKGKGVGSFQVAFLDALSQMKSEMIMDK
3HPD Chain:A ((6-256))
EALKRVRERRPLVHNITNFVVMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEILS-RGVDVLKGNFGEISALLGEEG--------GEEEAKKLTMNAAREFNTTVAVTGAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVT-E--PLKATTSALVTFGIAAEKAYEE--AKYPGSFHVKLYDWLYRINENVIRTY
General information:
TITO was launched using:
RESULT:
Template:
3HPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -200222 for 2224 contacts (-90.0/contact) +
2D Compatibility (PS) -25844 + (NN) -9573 + (LL) -320
1D Compatibility (HY) -13200 + (ID) 4650
Total energy: -253809.0 ( -114.12 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3HPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HPD-query.scw
PDB file :
Tito_Scwrl_3HPD.pdb
: