Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISSNYSYPLDP-----SWNTEDITKVLRFLNQVEHAYEN---SVKVDDLLDSYKEFKKVVKSKAQEKQIDREFQRTSGYSTYQAVKAAQQQAKGFISLGR
1RXQ Chain:A ((5-50))
----NLSYPIGEYKPRESISKEQKDKWIQVLEEVPAKLKQAVEVMTDSQLDTPYRDGGWTVRQVVHHLADSHMNSYIRFKLSLTEETPAIRPYDEKAWSEL
General information:
TITO was launched using:
RESULT:
Template:
1RXQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1048 for 124 contacts (8.5/contact) +
2D Compatibility (PS) -3931 + (NN) -1384 + (LL) 356
1D Compatibility (HY) -4000 + (ID) 500
Total energy: -8411.0 ( -67.83 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_1RXQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RXQ-query.scw
PDB file :
Tito_Scwrl_1RXQ.pdb
: