Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDVLIIEDDPMVEFIHRNYLEKLNYFQNIYSTASQTQAIAYLNDIKIQLVLLDIHIKEGNGLELLKLLRNQHQNTEVIVISAANEAHTVKEAFHLGIVDYLIKPFTFERFESSIEKFLNHYHTFEADKIYQDNIDHFQKIDSGWLEGEVKLDEKGLSEITYQHILDAIQELEQPFTIQELAKCSQFSHVSVRKYIAYMEEKGLLTSQQIYTKVGRPYKVYKLIKKT
2TMY Chain:A ((5-117))
--VLIVDDAAFMRMMLKDIITKAGYEVAGEATNGR-EAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2TMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94286 for 897 contacts (-105.1/contact) +
2D Compatibility (PS) -12159 + (NN) -7167 + (LL) 8916
1D Compatibility (HY) -8400 + (ID) 1550
Total energy: -114646.0 ( -127.81 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_2TMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2TMY-query.scw
PDB file :
Tito_Scwrl_2TMY.pdb
: