Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MKKRIWYLI--IIITVILGGLAMKNLFATTEASSRKQEQDRVVKYIKQHVELTNGDQIKKVEFIDFQKNEMTGTWG-ISTKINEQFSISFSED------RIGG------------KLRALGYQPNEIG---FSKDINSNNQNVNDIEVIYMKEE
3ZC4 Chain:A ((8-164))
PVAETISKRFWTLIKMLRFYVVLRRFGYIDPLIYSI--DPKQIKDVLSEALREFVSYTSSSSSRSIVIYDDPKNPVTAQAPCLVVAKRDEIPQNFPSIYRYTIYKIDKSSEYCISPLVVNDKYATLITPNESVIKEFFDKLDSNIQYARVLASLAVGGE
General information:
TITO was launched using:
RESULT:
Template:
3ZC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28944 for 777 contacts (-37.3/contact) +
2D Compatibility (PS) -12802 + (NN) 3045 + (LL) 116
1D Compatibility (HY) -6000 + (ID) 1350
Total energy: -45935.0 ( -59.12 by residue)
QMean score : 0.259
(partial model without unconserved sides chains):
PDB file :
Tito_3ZC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZC4-query.scw
PDB file :
Tito_Scwrl_3ZC4.pdb
: