Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISFENVSKSYGDHTIIDNISCHIQRGEFFVLVGASGSGKTTILKMINRLIEPSQGAITLDGENITSLDLRQLRLETGYVLQQIALFPNLTVGENIELIPEMKGWSKGDQKKAASDLLDKVGLPAKDYFNRYPHELSGGEQQRIGILRAIVAKPKVLLMDEPFSALDPISRRQLQDITKQLQSELGITLVFVTHDMKEAMRLADRICVIKEGKIVQLDRPEIIQNNPSDQFVRTLFEEEN
4TQV Chain:C ((5-235))
-VSIQNVVKRYDKTTVVHGVSLDIEPGEFVVLVGPSGCGKSTTLRMVAGLEEISGGTIRIDGRVIN--DLAPKDRDVAMVFQNYALYPHLNVRDNISFGLRLKRTKKSVIDAAVKTAADILGL--QPLLERKPSDLSGGQRQRVAMGRAIVRDPKVFLFDQPLSNLDAKLRTQMRAEIKRLHQRLGTTVIYVTHDQVEAMTLADRIVVMRDGLIEQIGKPMDLFLHPANTFVASFIGSPP
General information:
TITO was launched using:
RESULT:
Template:
4TQV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160869 for 1857 contacts (-86.6/contact) +
2D Compatibility (PS) -25028 + (NN) -7277 + (LL) 360
1D Compatibility (HY) -20800 + (ID) 4750
Total energy: -218364.0 ( -117.59 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_4TQV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TQV-query.scw
PDB file :
Tito_Scwrl_4TQV.pdb
: