Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMGEAAYVTVSALTKYIKR----KFDVDPHLENIWIKGELSNVKIHTRGHIYFTLKDENAR-MQSVMFARQSERLPFKPENGMKVLVRGGISVYEPSGNYQLYAKEMQPDGVGALYLAYEELKKKLAGEGLFDDRYKKQIPAFPATIGVVTSPTGAAVRDVITTLKRRYPLVKVIVLPALVQGENASRSIVTRIEEANEKEICDVLIVGRGGGSIEELWAFNEEIVARAIFASNIPIISAVGHETDFTISDFVADIRAATPTGAAEIAVPHTTDLIERTKTAEVRMTRAMQQHLGQKKERIQTLQSSYAFRFPKRLYAQKEQQFDLAYQQFQAQLTALLDRKSRQLERETYRLEALHPHEQLKQARTRYQEQTNQLRKNMNIQMKQLHSQFQTVLGKLNALSPLQVMERGYSLAYKEDKLIKSVSQIEEQDRLEIKLKDGVLTCEVLEKRGEEK
3KDF Chain:D ((5-109))--HIVPCTISQLLSATLVDEVFRIGN-VEISQVTIVGIIRHAEKA-PTNIVYKIDDMTAAPMDVRQWV-------TVVPPETYVKVAGHLRSF--QNKKSLVAFKIMPL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3KDF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 400 -193 -0.48 -2.12
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain D : 0.56

3D Compatibility (PKB) : -0.48
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.56
QMean score : 0.656

(partial model without unconserved sides chains):
PDB file : Tito_3KDF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3KDF-query.scw
PDB file : Tito_Scwrl_3KDF.pdb: