Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTATVEIRRAADRAVTTTSWLKSRHSFSFGDHYDPDNTHHGLLLVNNDDQMEPASGFD-PHPHRDMEIVTWVLRGALRHQDSAGNSGVIYPGLAQRMSAGTGILHSEMNDSATEPVHFVQMWVI--PDATGITASYQQQEIDDEL--LRAGLVTIASGIPGQDAALTLHNSSASLHGARLRPGATVSLP--CAPFLHLFVAYGRLTL--EGG-GELADGDAVRFTDADARGLTA-NEP-SEVLIWEMHAKLGDSAT
1RC6 Chain:A ((1060-1252))
--------------------------------------------VDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAE-GKTFALSEGGYLYCPP--GSLMTFVNAQ-AEDSQIFLYKRRYVPVE-GYAPWLVSGNASELERI---VILLDFLPK-------ELG-FDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGV---AFSYIYS-----------
General information:
TITO was launched using:
RESULT:
Template:
1RC6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53676 for 1244 contacts (-43.1/contact) +
2D Compatibility (PS) -17820 + (NN) -638 + (LL) 3964
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -72820.0 ( -58.54 by residue)
QMean score : 0.265
(partial model without unconserved sides chains):
PDB file :
Tito_1RC6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RC6-query.scw
PDB file :
Tito_Scwrl_1RC6.pdb
: