Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTVHSSIDQHPDLLALRASFDRAAESTIAHFTFGLALLAGLYVAASPWIVGFSATRGLPTCDLIVGIAVAYLAYGFASALDRTHGMTWTLPVLGVWVIFSPWVLPGVAV------------TAGMMWSHIIAGAVVAVLGFYFGMRTRAAANQG
4GD3 Chain:A ((17-98))
----------------------------------------------------------------------------------PVRIWHWLTVLCMAVLMVTGYFIGK-PLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVL--------------
General information:
TITO was launched using:
RESULT:
Template:
4GD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30286 for 248 contacts (-122.1/contact) +
2D Compatibility (PS) -4496 + (NN) -451 + (LL) 7428
1D Compatibility (HY) -6000 + (ID) 300
Total energy: -34105.0 ( -137.52 by residue)
QMean score : 0.015
(partial model without unconserved sides chains):
PDB file :
Tito_4GD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GD3-query.scw
PDB file :
Tito_Scwrl_4GD3.pdb
: