Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIHCTVPSRPWWHFADYGCYCGRGGKGTAVDDLDRCCQVHDNCYGEAEKL-GCWPYLTLYKYECSQGKLTCSGGNNKCEAAVCNCDLVAANCFAGAPYIDANYNVNLKERCQ
1MF4 Chain:A ((1-118))
NLYQFKNMIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDANYNIDLKARC-
General information:
TITO was launched using:
RESULT:
Template:
1MF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78031 for 860 contacts (-90.7/contact) +
2D Compatibility (PS) -12663 + (NN) -6443 + (LL) 120
1D Compatibility (HY) -13600 + (ID) 4300
Total energy: -114917.0 ( -133.62 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_1MF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MF4-query.scw
PDB file :
Tito_Scwrl_1MF4.pdb
: