Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIKCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDNNYNIDLKARCQ
1XXW Chain:A ((1-119))
NTYQFKNMIQCTVPKRSWWDFADYGCYCGRGGSGTPIDDLDRCCQVHDNCYNSAREQGGCRPKQKTYSYECKAGTLSCSGSNNSCAATVCDCDRLAAICFAGAPYNDNNYNIDLKARCQ
General information:
TITO was launched using:
RESULT:
Template:
1XXW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69169 for 883 contacts (-78.3/contact) +
2D Compatibility (PS) -12976 + (NN) -8223 + (LL) 0
1D Compatibility (HY) -13600 + (ID) 5000
Total energy: -108968.0 ( -123.41 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_1XXW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XXW-query.scw
PDB file :
Tito_Scwrl_1XXW.pdb
: